PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0204400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 520aa    MW: 57651.9 Da    PI: 4.3389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0204400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07336384247
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                        +rWT eE+ l++++v   ++      W+  +r ++ g+t  +++s+++++
  ORGLA03G0204400.1 336 QRWTDEEESLFYRVVYSNPPSlgknFWHFLPRALP-GKTSMELVSYYFNV 384
                        79**************988668888**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0055334387IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-5336385IPR009057Homeodomain-like
CDDcd001673.08E-6337385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE  60
SKIASTGLKP GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA CKRPKQIDEN  120
TWSTSTFETS FSDLADETRE PDYIYHNSGI SACNTSSSIP YSNLEQLIGE ENLYLPDWVT  180
TFPGYSGDFW PAPVADQVDD IDSPIHDHLP RKAVAIGPDH QADIPEWRPR ILMTVPYGSG  240
SCADLSYSSV STSGSAPRDE DSESDKWIKH CVIEMPSSCS VAWVGDHGRD CGCSDEGSIR  300
CVRRHVLESR ENLKRIFGED KFRELGLCEM GEDIAQRWTD EEESLFYRVV YSNPPSLGKN  360
FWHFLPRALP GKTSMELVSY YFNVFMLRKR AQQNRSEPLH VDSDDDEVPD EPSVTEDEDS  420
AVESPAHDYY VNNPMSPESE DSFHEKVADS LSGLRDGPSQ KPLGSNTDNP GGDADVQDES  480
CTSFEDHNGA HGSNGVQCAE FHMMLPNAAL DHYSDRGACM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8311880.0CT831188.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631894.10.0PREDICTED: uncharacterized protein LOC4333157
RefseqXP_015631895.10.0PREDICTED: uncharacterized protein LOC4333157
TrEMBLI1PCE80.0I1PCE8_ORYGL; Uncharacterized protein
STRINGORGLA03G0204400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1443166